Co-expression analysis

Gene ID	Contig19665_at
Gene name
Homology with Arabidopsis	Similar to At3g16820: F-box family protein (HF=3e-1)
Module size	6 genes
NF	0.68
%ile	89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.93	Contig19665_at	Contig19665	-	-	3e-1	At3g16820	F-box family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	HU09E15u_x_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.91	HU09E15u_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig5175_at	Contig5175	-	-	4e-11	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig15180_at	Contig15180	-	-	2e-1	At1g57690	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.6	95.3	GSM160822	38% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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