CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig19576_x_at

Gene name
Homology with Arabidopsis Similar to At2g29910: F-box family protein (HF=5e-1)

Module size 6 genes

NF 0.49

%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 0.96 Contig19576_x_at Contig19576 - - 5e-1 At2g29910 F-box family protein O.I. H.G. S.X.
0.55 72.0 0.96 HW05K01u_at HW05K01u - - 9e-1 At3g15150 zinc ion binding O.I. H.G. S.X.
0.50 66.9 0.96 Contig25477_at Contig25477 - - 6e+0 At5g33421 unknown protein O.I. H.G. S.X.
0.42 55.2 0.96 Contig9642_at Contig9642 - - 1e-13 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) O.I. H.G. S.X.
0.38 49.5 0.96 Contig1188_s_at Contig1188 amylase/protease inhibitor - 6e+0 At5g05120 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig16630_at Contig16630 - - 1e+0 At1g31250 proline-rich family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.3 99.7 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.4 99.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7 98.6 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4 96.6 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM160815 drought control rep3 GSE6990 Barley drought stress
3.8 95.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.131803.1.S1_at, orthologous to the query gene, Contig19576_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 76.8 TaAffx.131803.1.S1_at At2g29910 - - 1e+0 At2g23320 WRKY15 O.I. H.G. S.X.
0.50 72.4 TaAffx.92235.1.A1_at At2g29910 - - 5e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.46 66.8 Ta.2958.2.S1_at At2g29910 - - 3e-1 At3g22961 - O.I. H.G. S.X.
0.42 60.9 TaAffx.110539.1.S1_s_at At2g29910 - - 3e-9 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein O.I. H.G. S.X.
0.29 39.2 Ta.1733.1.S1_at At2g29910 - - 7e+0 At2g01890 PAP8 (PURPLE ACID PHOSPHATASE 8) O.I. H.G. S.X.
0.20 24.0 Ta.5210.3.S1_at At2g29910 - - 2e-9 At2g02020 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.14 15.8 Ta.16498.2.S1_a_at At2g29910 - - 2e-5 At5g36940 CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) O.I. H.G. S.X.
0.07 8.6 Ta.22672.1.S1_at At2g29910 triticain alpha - 1e-12 At1g47128 RD21 (responsive to dehydration 21) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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