Co-expression analysis

Gene ID	Contig19576_x_at
Gene name
Homology with Arabidopsis	Similar to At2g29910: F-box family protein (HF=5e-1)
Module size	6 genes
NF	0.49
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HW05K01u_at	HW05K01u	-	-	9e-1	At3g15150	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig25477_at	Contig25477	-	-	6e+0	At5g33421	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig1188_s_at	Contig1188	amylase/protease inhibitor	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.3	99.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.4	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222925.1.S1_at, orthologous to the query gene, Contig19576_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	PtpAffx.222925.1.S1_at	At2g29910	hypothetical protein	-	1e+1	At4g33710	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211054.1.S1_at	At2g29910	hypothetical protein	-	4e+0	At4g05631	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.76299.1.A1_at	At2g29910	-	-	1e+0	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.249.168.S1_at	At2g29910	-	-	9e-5	At4g16190	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.219169.1.S1_x_at	At2g29910	hypothetical protein	-	5e-1	At3g52900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.202399.1.S1_x_at	At2g29910	hypothetical protein	-	1e-6	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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