Co-expression analysis

Gene ID	Contig1955_s_at
Gene name
Homology with Arabidopsis	Similar to At5g17950: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.55
%ile	76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.94	Contig1955_s_at	Contig1955	-	-	5e-1	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.94	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig6370_at	Contig6370	-	-	9e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig9526_at	Contig9526	-	-	2e-6	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	HV_CEa0006M01r2_at	HV_CEa0006M01r2	-	-	3e-1	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.1	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.1	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.4	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.8	99.3	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
11.0	99.2	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.9	98.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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