Co-expression analysis

Gene ID	Contig19500_at
Gene name
Homology with Arabidopsis	Similar to At5g09805: IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) (HF=7e+0)
Module size	26 genes
NF	0.43
%ile	60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.4	0.92	Contig19500_at	Contig19500	-	-	7e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig25088_at	Contig25088	-	-	2e-18	At5g36210	serine-type peptidase	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	HT06M11u_at	HT06M11u	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	HW02G06T_at	HW02G06T	-	-	2e+1	At5g59613	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.96	HVSMEf0019I03r2_s_at	HVSMEf0019I03r2	-	-	4e+0	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.93	rbags16h12_at	rbags16h12	-	-	9e-1	At2g04066	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	HVSMEm0018O23r2_at	HVSMEm0018O23r2	-	-	1e-3	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.94	Contig24882_at	Contig24882	-	-	9e-1	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	HS06P18u_at	HS06P18u	-	-	5e-1	At3g22630	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig18830_at	Contig18830	-	-	3e+0	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig23019_at	Contig23019	-	-	2e+0	At1g73780	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	EBro08_SQ007_C12_at	EBro08_SQ007_C12	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig2379_s_at	Contig2379	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	HVSMEb0014G03r2_x_at	HVSMEb0014G03r2	-	-	5e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	S0001000057I10F1_at	S0001000057I10F1	-	-	1e+1	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig20777_at	Contig20777	-	-	1e-1	At3g47640	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	AF474072_CDS-4_at	AF474072_CDS-4	-	-	1e+0	At5g05810	ATL43	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	rbags8a08_at	rbags8a08	-	-	3e+0	At5g47100	CBL9	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.9	93.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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