Co-expression analysis

Gene ID	Contig19475_at
Gene name
Homology with Arabidopsis	Similar to At2g42320: nucleolar protein gar2-related (HF=2e-9)
Module size	6 genes
NF	0.11
%ile	14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.82	Contig19475_at	Contig19475	-	-	2e-9	At2g42320	nucleolar protein gar2-related	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.77	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.83	Contig704_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.79	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.76	Contig7012_at	Contig7012	-	-	6e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
6.5	98.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.8	97.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.6	95.3	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.2972.1.A1_at, orthologous to the query gene, Contig19475_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	Zm.2972.1.A1_at	At2g42320	-	-	4e-3	At3g01810	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.7276.1.S1_at	At2g42320	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.17687.1.S1_at	At2g42320	-	-	2e-1	At1g30972	-	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.3233.1.S1_at	At2g42320	hypothetical protein LOC100273932	-	7e-1	At5g45630	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.6604.1.A1_at	At2g42320	hypothetical protein LOC100280387	-	5e+0	At3g18160	peroxin-3 family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.2926.1.A1_at	At2g42320	calmodulin-like protein 1	-	2e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.6569.9.A1_at	At2g42320	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.10826.1.S1_at	At2g42320	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.236.1.S1_at	At2g42320	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.13671.1.S1_at	At2g42320	Hypothetical protein LOC100193899	-	5e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5290.2.S1_at	At2g42320	-	-	5e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	ZmAffx.1025.1.A1_at	At2g42320	-	-	8e-1	At2g25312	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2792.1.S1_at	At2g42320	hypothetical protein LOC100276061	-	8e-10	At5g59960	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.2233.1.A1_at	At2g42320	-	-	3e-1	At3g56860	UBP1 interacting protein 2a (UBA2a)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.5926.1.S1_at	At2g42320	-	-	1e-8	At4g16070	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.12590.1.S1_at	At2g42320	-	-	2e-53	At5g16930	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.5976.2.S1_at	At2g42320	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13409.1.S1_at	At2g42320	3-oxoacyl-synthase III	-	6e-2	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.12821.1.A1_at	At2g42320	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.4878.1.A1_at	At2g42320	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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