Co-expression analysis

Gene ID	Contig19475_at
Gene name
Homology with Arabidopsis	Similar to At2g42320: nucleolar protein gar2-related (HF=2e-9)
Module size	6 genes
NF	0.11
%ile	14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.82	Contig19475_at	Contig19475	-	-	2e-9	At2g42320	nucleolar protein gar2-related	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.77	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.83	Contig704_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.79	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.76	Contig7012_at	Contig7012	-	-	6e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
6.5	98.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.8	97.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.6	95.3	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the grape gene, 1606524_at, orthologous to the query gene, Contig19475_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1606524_at	At2g42320	hypothetical protein LOC100266440	-	2e-19	At3g01810	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	1607622_at	At2g42320	hypothetical protein LOC100265082	-	8e-17	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1622787_at	At2g42320	hypothetical protein LOC100244878	-	4e-19	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616050_at	At2g42320	hypothetical protein LOC100244878	-	9e+0	At5g06280	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620603_at	At2g42320	hypothetical protein LOC100256346	-	2e-43	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1610669_at	At2g42320	hypothetical protein LOC100259403	-	6e-2	At1g69825	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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