Co-expression analysis

Gene ID Contig19475_at
Gene name
Homology with ArabidopsisSimilar to At2g42320: nucleolar protein gar2-related (HF=2e-9)
Module size 6 genes
NF 0.11
%ile 14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.82Contig19475_atContig19475--2e-9At2g42320nucleolar protein gar2-relatedO.I.H.G.S.X.
0.6178.70.77Contig4487_s_atContig4487--4e-1At5g16470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4458.90.88Contig4489_s_atContig4489--3e+0At2g29525-O.I.H.G.S.X.
0.119.40.83Contig704_atContig704--1e-1At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.086.50.79Contig3187_s_atContig3187--1e+0At1g31410putrescine-binding periplasmic protein-relatedO.I.H.G.S.X.
0.043.40.76Contig7012_atContig7012--6e+0At1g57730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
6.598.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
5.897.8GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.197.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.29571.1.A1_at, orthologous to the query gene, Contig19475_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.3Ta.29571.1.A1_atAt2g42320--5e-1At1g43624unknown proteinO.I.H.G.S.X.
0.2329.0TaAffx.36669.1.A1_s_atAt2g42320--1e+0At4g13020MHKO.I.H.G.S.X.
0.1112.4Ta.5589.2.S1_a_atAt2g42320--2e-8At5g36890BGLU42 (BETA GLUCOSIDASE 42)O.I.H.G.S.X.
0.1011.3Ta.7560.1.S1_atAt2g42320--2e+0At1g76440-O.I.H.G.S.X.
0.045.8Ta.6634.1.A1_atAt2g42320--9e+0At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.034.7TaAffx.91654.1.A1_atAt2g42320--1e+0At4g34410RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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