CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig19475_at

Gene name
Homology with Arabidopsis Similar to At2g42320: nucleolar protein gar2-related (HF=2e-9)

Module size 6 genes

NF 0.11

%ile 14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.82 Contig19475_at Contig19475 - - 2e-9 At2g42320 nucleolar protein gar2-related O.I. H.G. S.X.
0.61 78.7 0.77 Contig4487_s_at Contig4487 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.44 58.9 0.88 Contig4489_s_at Contig4489 - - 3e+0 At2g29525 - O.I. H.G. S.X.
0.11 9.4 0.83 Contig704_at Contig704 - - 1e-1 At1g15140 oxidoreductase NAD-binding domain-containing protein O.I. H.G. S.X.
0.08 6.5 0.79 Contig3187_s_at Contig3187 - - 1e+0 At1g31410 putrescine-binding periplasmic protein-related O.I. H.G. S.X.
0.04 3.4 0.76 Contig7012_at Contig7012 - - 6e+0 At1g57730 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.6 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
6.5 98.2 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
5.8 97.8 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1 97.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.6 95.3 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5 95.1 GSM146371 Golden Promise shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3 94.6 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2 94.3 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2 94.3 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the rice gene, Os09g0487200, orthologous to the query gene, Contig19475_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os09g0487200 At2g42320 - Conserved hypothetical protein 3e-8 At2g42320 nucleolar protein gar2-related O.I. H.G. S.X.
0.47 62.3 Os01g0636500 At2g42320 - Glycoside hydrolase, family 28 protein 6e-4 At1g10640 polygalacturonase O.I. H.G. S.X.
0.47 62.3 Os06g0624700 At2g42320 - Conserved hypothetical protein 2e-7 At2g33570 unknown protein O.I. H.G. S.X.
0.40 51.1 Os08g0550500 At2g42320 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 51.1 Os02g0666500 At2g42320 - Cytochrome P450 1e-3 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) O.I. H.G. S.X.
0.33 38.8 Os02g0161800 At2g42320 - Peroxidase precursor (EC 1.11.1.7) 7e-1 At1g48750 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.29 31.1 Os11g0462100 At2g42320 - Glycoside hydrolase, family 18 protein 8e-1 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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