CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig19475_at

Gene name
Homology with Arabidopsis Similar to At2g42320: nucleolar protein gar2-related (HF=2e-9)

Module size 6 genes

NF 0.11

%ile 14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.82 Contig19475_at Contig19475 - - 2e-9 At2g42320 nucleolar protein gar2-related O.I. H.G. S.X.
0.61 78.7 0.77 Contig4487_s_at Contig4487 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.44 58.9 0.88 Contig4489_s_at Contig4489 - - 3e+0 At2g29525 - O.I. H.G. S.X.
0.11 9.4 0.83 Contig704_at Contig704 - - 1e-1 At1g15140 oxidoreductase NAD-binding domain-containing protein O.I. H.G. S.X.
0.08 6.5 0.79 Contig3187_s_at Contig3187 - - 1e+0 At1g31410 putrescine-binding periplasmic protein-related O.I. H.G. S.X.
0.04 3.4 0.76 Contig7012_at Contig7012 - - 6e+0 At1g57730 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.6 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
6.5 98.2 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
5.8 97.8 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1 97.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.6 95.3 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5 95.1 GSM146371 Golden Promise shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3 94.6 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2 94.3 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2 94.3 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2048.1.S1_at, orthologous to the query gene, Contig19475_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.51 72.3 Gma.2048.1.S1_at At2g42320 - - 1e-7 At2g42320 nucleolar protein gar2-related O.I. H.G. S.X.
0.61 81.8 Gma.11254.1.S1_a_at At2g42320 - - 9e+0 At5g45040 cytochrome c6 (ATC6) O.I. H.G. S.X.
0.57 78.8 Gma.11367.1.S1_at At2g42320 - - 8e-3 At5g16840 BPA1 (BINDINGPARTNEROFACD11 1) O.I. H.G. S.X.
0.56 78.2 GmaAffx.39605.1.S1_at At2g42320 - - 2e+0 At2g41470 unknown protein O.I. H.G. S.X.
0.52 73.1 Gma.11254.1.S1_x_at At2g42320 - - 9e+0 At5g45040 cytochrome c6 (ATC6) O.I. H.G. S.X.
0.48 67.7 Gma.10862.1.S1_a_at At2g42320 - - 2e-88 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) O.I. H.G. S.X.
0.40 57.1 GmaAffx.90941.1.S1_s_at At2g42320 - - 5e-15 At1g63000 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) O.I. H.G. S.X.
0.38 53.3 Gma.10876.1.S1_at At2g42320 - - 2e-92 At5g22740 ATCSLA02 O.I. H.G. S.X.
0.35 48.6 Gma.15532.1.S1_at At2g42320 - - 2e-5 At3g62060 pectinacetylesterase family protein O.I. H.G. S.X.
0.30 40.4 Gma.10206.1.S1_at At2g42320 - - 2e-46 At2g21770 CESA9 (CELLULOSE SYNTHASE A9) O.I. H.G. S.X.
0.29 39.0 Gma.11015.1.S1_at At2g42320 - - 1e-24 At1g53730 SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) O.I. H.G. S.X.
0.27 35.7 Gma.11254.3.S1_a_at At2g42320 - - 4e+0 At4g13790 auxin-responsive protein, putative O.I. H.G. S.X.
0.23 29.9 Gma.1078.1.A1_at At2g42320 protein-O-fucosyltransferase 2 - 2e-8 At1g17270 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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