Co-expression analysis

Gene ID	Contig19393_at
Gene name
Homology with Arabidopsis	Similar to At3g53420: PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) (HF=3e-10)
Module size	20 genes
NF	0.56
%ile	78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.88	Contig19393_at	Contig19393	-	-	3e-10	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.91	HV12H12u_at	HV12H12u	-	-	2e-45	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.91	Contig2112_at	Contig2112	-	-	1e-8	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.93	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.93	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.93	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.92	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	HV10P15u_at	HV10P15u	-	-	3e+0	At2g28725	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.92	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.91	Contig18738_at	Contig18738	-	-	4e+0	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.91	HV14N11u_s_at	HV14N11u	-	-	3e-1	At5g64490	binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.89	Contig1776_s_at	Contig1776	-	-	3e+0	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.92	HVSMEb0005H04r2_at	HVSMEb0005H04r2	-	-	2e+0	At3g44755	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.92	HO09D01S_at	HO09D01S	-	-	2e-1	Atmg00990	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.91	Contig16360_at	Contig16360	-	-	7e-3	At4g21366	ATP binding / protein tyrosine kinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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