Co-expression analysis

Gene ID	Contig19357_at
Gene name
Homology with Arabidopsis	Similar to At3g14840: leucine-rich repeat family protein / protein kinase family protein (HF=2e+0)
Module size	35 genes
NF	0.37
%ile	50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.76	Contig19357_at	Contig19357	-	-	2e+0	At3g14840	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.87	HV_CEb0008L21r2_at	HV_CEb0008L21r2	-	-	2e+1	At5g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.88	HVSMEm0004M03r2_at	HVSMEm0004M03r2	-	-	8e+0	At4g29035	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.85	HVSMEl0014P01r2_at	HVSMEl0014P01r2	-	-	3e+0	At5g38910	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.78	Contig619_at	Contig619	-	-	8e-10	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.83	Contig6557_s_at	Contig6557	-	-	2e+0	At1g15370	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.87	EBro03_SQ007_C24_at	EBro03_SQ007_C24	-	-	1e+0	At4g15885	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.81	Contig11142_at	Contig11142	-	-	7e-4	At1g08370	DCP1 (decapping 1)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.83	HW09B04u_at	HW09B04u	-	-	2e-1	At5g46360	KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.86	Contig14005_at	Contig14005	-	-	2e-16	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	HZ50I02r_at	HZ50I02r	-	-	3e+0	At4g30590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.86	Contig12724_at	Contig12724	-	-	1e-5	At5g24530	DMR6 (DOWNY MILDEW RESISTANT 6)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.87	Contig8948_at	Contig8948	-	-	8e-7	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.86	HM03F19u_at	HM03F19u	-	-	2e-2	At3g18570	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	HVSMEm0012B14r2_at	HVSMEm0012B14r2	-	-	1e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	Contig1166_s_at	Contig1166	-	-	7e-18	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.85	Contig18384_at	Contig18384	-	-	2e+0	At1g56233	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.82	HM14E10r_at	HM14E10r	-	-	8e-1	At4g34470	ASK12 (ARABIDOPSIS SKP1-LIKE 12)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.92	Contig17678_at	Contig17678	-	-	3e-4	At2g47330	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.84	Contig6566_at	Contig6566	-	-	5e-1	At1g63960	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig24294_at	Contig24294	-	-	5e+0	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.87	Contig24807_at	Contig24807	-	-	7e-13	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.86	Contig11079_at	Contig11079	-	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.84	Contig14617_at	Contig14617	-	-	1e+0	At3g04360	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.89	HVSMEn0004H06r2_at	HVSMEn0004H06r2	-	-	4e-16	At2g18390	TTN5 (TITAN 5)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.73	Contig24077_at	Contig24077	-	-	1e+0	At1g48480	RKL1	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.77	Contig22908_at	Contig22908	-	-	3e+0	At3g02290	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	rbags21o19_at	rbags21o19	-	-	3e-1	At5g26114	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.79	HVSMEg0006E16f2_at	HVSMEg0006E16f2	-	-	3e+0	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.74	Contig25624_at	Contig25624	-	-	1e-1	At3g57750	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.77	Contig1131_s_at	Contig1131	-	-	1e-10	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.77	Contig21769_s_at	Contig21769	-	-	8e+0	At5g25480	DNMT2 (DNA METHYLTRANSFERASE-2)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.82	Contig1419_s_at	Contig1419	-	-	6e-2	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig14116_at	Contig14116	-	-	6e-1	At2g15680	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.85	Contig8283_at	Contig8283	-	-	3e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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