Co-expression analysis

Gene ID Contig1934_at
Gene name
Homology with ArabidopsisSimilar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=7e-13)
Module size 7 genes
NF 0.27
%ile 34.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.95Contig1934_atContig1934--7e-13At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.4053.10.95Contig10389_atContig10389--2e+0At5g67490unknown proteinO.I.H.G.S.X.
0.3240.30.95Contig14397_atContig14397--5e-1At3g52105unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig25477_atContig25477--6e+0At5g33421unknown proteinO.I.H.G.S.X.
0.2835.50.95Contig5475_atContig5475--5e+0At5g05960protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2427.20.95Contig11867_s_atContig11867--4e-1At1g03790SOM (SOMNUS)O.I.H.G.S.X.
0.1311.60.95HA31E10r_s_atHA31E10r--1e+0At4g15620integral membrane family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.399.7GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
17.199.6GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
16.599.6GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.194.1GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage