Co-expression analysis

Gene ID	Contig19290_at
Gene name
Homology with Arabidopsis	Similar to At5g65020: ANNAT2 (Annexin Arabidopsis 2) (HF=7e+0)
Module size	8 genes
NF	0.53
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.82	Contig19290_at	Contig19290	-	-	7e+0	At5g65020	ANNAT2 (Annexin Arabidopsis 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig10796_at	Contig10796	-	-	1e-7	At5g19350	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.89	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.86	Contig2124_at	Contig2124	-	-	2e-9	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig6384_at	Contig6384	-	-	8e-20	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.84	Contig8812_s_at	Contig8812	-	-	2e+0	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	Contig3556_at	Contig3556	-	-	3e+0	At1g60640	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.86	Contig14226_at	Contig14226	-	-	2e-7	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.2	99.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7	99.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4	99.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
8.5	98.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.7	98.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
5.8	97.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
4.1	96.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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