Co-expression analysis

Gene ID Contig19274_at
Gene name
Homology with ArabidopsisSimilar to At5g09230: SRT2 (SIRTUIN 2) (HF=4e+0)
Module size 11 genes
NF 0.32
%ile 41.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.20.90Contig19274_atContig19274--4e+0At5g09230SRT2 (SIRTUIN 2)O.I.H.G.S.X.
0.5066.90.95Contig18088_atContig18088--6e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.4053.10.93rbaal33e01_s_atrbaal33e01--4e-1At1g77960unknown proteinO.I.H.G.S.X.
0.3849.50.96Contig19523_atContig19523--2e+0At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.3647.10.95Contig19538_atContig19538--2e+0At3g51140-O.I.H.G.S.X.
0.3037.00.95Contig9119_s_atContig9119--1e-1At3g09250DNA binding / nucleaseO.I.H.G.S.X.
0.2732.10.96Contig2932_atContig2932--2e-4At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.2528.90.96Contig7364_atContig7364--5e-13At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.2326.10.95Contig5515_atContig5515--6e+0At4g24980-O.I.H.G.S.X.
0.1919.60.95Contig8703_atContig8703--2e-42At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.1716.90.95Contig22777_atContig22777--1e-2At1g78710unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.199.8GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.299.4GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.099.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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