Co-expression analysis

Gene ID	Contig19167_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55550: RNA recognition motif (RRM)-containing protein (HF=1e+1)
Module size	17 genes
NF	0.28
%ile	35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig19167_s_at	Contig19167	-	-	1e+1	At5g55550	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig14345_at	Contig14345	-	-	2e-8	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig10426_at	Contig10426	-	-	3e-9	At3g19630	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig20621_at	Contig20621	-	-	2e-3	At4g27320	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	HVSMEg0010H15r2_at	HVSMEg0010H15r2	-	-	3e+0	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig25611_at	Contig25611	-	-	2e-2	At1g68870	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig15839_s_at	Contig15839	-	-	3e+0	At5g61650	CYCP4	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig6814_at	Contig6814	-	-	7e-9	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig12120_at	Contig12120	-	-	3e-25	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig15831_at	Contig15831	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig7402_at	Contig7402	-	-	3e+0	At1g68480	JAG (JAGGED)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.6	98.2	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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