Co-expression analysis

Gene ID	Contig19129_at
Gene name
Homology with Arabidopsis	Similar to At1g62250: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.95	Contig19129_at	Contig19129	-	-	2e+0	At1g62250	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig25106_at	Contig25106	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig18315_at	Contig18315	-	-	3e-8	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig23295_at	Contig23295	-	-	5e+0	At3g10720	pectinesterase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig25138_at	Contig25138	-	-	3e+0	At1g19740	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig20268_at	Contig20268	-	-	4e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.7	97.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage