Co-expression analysis

Gene ID Contig19081_at
Gene name
Homology with ArabidopsisSimilar to At5g53550: YSL3 (YELLOW STRIPE LIKE 3) (HF=2e-3)
Module size 6 genes
NF 0.32
%ile 42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Contig19081_atContig19081--2e-3At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.4053.10.97Contig2849_atContig2849--2e-1At1g23170unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig11702_atContig11702--4e-2At1g06150transcription factorO.I.H.G.S.X.
0.4053.10.97Contig16602_atContig16602--2e+0At5g23035-O.I.H.G.S.X.
0.3647.10.96Contig23109_atContig23109--2e+0At5g67245unknown proteinO.I.H.G.S.X.
0.1311.60.97Contig3408_atContig3408--1e-26At3g27430PBB1O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.95Contig15501_atContig15501--6e-2At1g56530hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5066.90.97Contig20487_atContig20487--5e+0At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)O.I.H.G.S.X.
0.4356.40.88HVSMEb0002O06r2_atHVSMEb0002O06r2--7e-2At5g62960unknown proteinO.I.H.G.S.X.
0.4255.20.91Contig5380_s_atContig5380--1e-4At1g30400MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.4053.10.95HZ51D22r_s_atHZ51D22r--4e+0At4g24974-O.I.H.G.S.X.
0.3849.50.94rbags16n18_atrbags16n18--5e+0At5g65550UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.3647.10.95Contig12433_atContig12433--2e+0Atmg01280-O.I.H.G.S.X.
0.3342.60.87Contig9193_atContig9193--2e+0At4g15093catalytic LigB subunit of aromatic ring-opening dioxygenase familyO.I.H.G.S.X.
0.3240.30.96Contig4988_atContig4988--2e-2At4g19170NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)O.I.H.G.S.X.
0.3240.30.93Contig14640_atContig14640--3e-5At2g46580pyridoxine 5'-phosphate oxidase-relatedO.I.H.G.S.X.
0.3037.00.93Contig23394_atContig23394--2e-2At5g46730glycine-rich proteinO.I.H.G.S.X.
0.2935.50.92S0001100150B08F1_s_atS0001100150B08F1--1e+1At5g43680unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig19502_atContig19502--7e+0At5g59613unknown proteinO.I.H.G.S.X.
0.2732.10.91Contig2993_atContig2993--1e-10At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.2732.10.88rbaal11e19_x_atrbaal11e19--2e+0At3g13510unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig5138_s_atContig5138--1e-1At1g56170NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)O.I.H.G.S.X.
0.2630.40.94Contig18612_atContig18612--5e+0At2g36026-O.I.H.G.S.X.
0.2528.90.96Contig4301_atContig4301--2e-3At5g48630cyclin family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.499.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
8.498.8GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.398.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.998.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.498.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.998.3GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.998.3GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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