Co-expression analysis

Gene ID Contig19081_at
Gene name
Homology with ArabidopsisSimilar to At5g53550: YSL3 (YELLOW STRIPE LIKE 3) (HF=2e-3)
Module size 6 genes
NF 0.32
%ile 42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Contig19081_atContig19081--2e-3At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.4053.10.97Contig2849_atContig2849--2e-1At1g23170unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig11702_atContig11702--4e-2At1g06150transcription factorO.I.H.G.S.X.
0.4053.10.97Contig16602_atContig16602--2e+0At5g23035-O.I.H.G.S.X.
0.3647.10.96Contig23109_atContig23109--2e+0At5g67245unknown proteinO.I.H.G.S.X.
0.1311.60.97Contig3408_atContig3408--1e-26At3g27430PBB1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.499.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
8.498.8GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.398.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.998.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.498.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.998.3GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.998.3GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622720_s_at, orthologous to the query gene, Contig19081_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.01622720_s_atAt5g53550YS1-like protein-like-8e-10At4g24120YSL1 (YELLOW STRIPE LIKE 1)O.I.H.G.S.X.
0.4666.51615134_atAt5g53550hypothetical protein LOC100259710-7e-9At5g51040unknown proteinO.I.H.G.S.X.
0.4260.11614685_atAt5g53550hypothetical protein LOC100264962-2e-18At5g02280synbindin, putativeO.I.H.G.S.X.
0.4057.71609588_atAt5g53550hypothetical protein LOC100262900-9e-8At4g18372small nuclear ribonucleoprotein-related / snRNP-relatedO.I.H.G.S.X.
0.4057.71608073_s_atAt5g53550--3e+0At2g15290TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)O.I.H.G.S.X.
0.3954.91617134_atAt5g53550hypothetical protein LOC100264012-2e+0At1g76980-O.I.H.G.S.X.
0.3954.91613988_atAt5g53550similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome-8e-2At1g53560unknown proteinO.I.H.G.S.X.
0.3954.91618393_atAt5g53550hypothetical protein LOC100265397-1e-41At2g32520dienelactone hydrolase family proteinO.I.H.G.S.X.
0.3954.91621870_atAt5g53550hypothetical protein LOC100245239-9e-8At3g20510unknown proteinO.I.H.G.S.X.
0.3853.61611475_atAt5g53550hypothetical protein LOC100267480-6e-26At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.3853.61612619_atAt5g53550hypothetical protein LOC100259714-5e-13At5g11680unknown proteinO.I.H.G.S.X.
0.3650.71616236_atAt5g53550hypothetical protein LOC100260831-2e-22At1g43900protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3650.71618050_s_atAt5g53550hypothetical protein LOC100259485-1e-2At3g01170structural constituent of ribosomeO.I.H.G.S.X.
0.3548.51614645_atAt5g53550similar to putative anti-virus transcriptional factor-1e-4At5g62910protein binding / zinc ion bindingO.I.H.G.S.X.
0.3446.81620787_s_atAt5g53550hypothetical protein LOC100263709-6e-40At5g35680eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putativeO.I.H.G.S.X.
0.3243.11615850_s_atAt5g53550hypothetical protein LOC100258165-6e+0At5g05110cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.3243.11607999_s_atAt5g53550hypothetical protein LOC100244107-4e-64At3g45310cysteine proteinase, putativeO.I.H.G.S.X.
0.3141.31619462_atAt5g53550hypothetical protein LOC100251802-6e-21At4g08790nitrilase, putativeO.I.H.G.S.X.
0.2837.71619593_atAt5g53550hypothetical protein LOC100255022-2e-11At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.2837.71621910_a_atAt5g53550--1e-134At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.2327.51608888_atAt5g53550hypothetical protein LOC100258013-2e-13At4g25130peptide methionine sulfoxide reductase, putativeO.I.H.G.S.X.
0.2327.51617886_atAt5g53550hypothetical protein LOC100254626-1e-20At4g36480ATLCB1 (LONG-CHAIN BASE1)O.I.H.G.S.X.
0.2327.51613772_s_atAt5g53550hypothetical protein LOC100241957-6e-27At5g43060cysteine proteinase, putative / thiol protease, putativeO.I.H.G.S.X.
0.2327.51615358_atAt5g53550hypothetical protein LOC100249986-1e-153At5g12200dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2)O.I.H.G.S.X.
0.2124.01618206_atAt5g53550hypothetical protein LOC100267569-3e-2At3g14750unknown proteinO.I.H.G.S.X.
0.1920.91609739_atAt5g53550hypothetical protein LOC100260961-1e-9At5g52580RAB GTPase activatorO.I.H.G.S.X.
0.1819.41617016_atAt5g53550hypothetical protein LOC100261969-3e-1At1g04960-O.I.H.G.S.X.
0.1819.41618507_atAt5g53550hypothetical protein LOC100247746-4e-3At4g16695unknown proteinO.I.H.G.S.X.
0.1515.61614924_atAt5g53550--1e-20At4g21570unknown proteinO.I.H.G.S.X.
0.1515.61613821_atAt5g53550papain-like cysteine proteinase-1e-11At4g16190cysteine proteinase, putativeO.I.H.G.S.X.
0.1414.41612136_atAt5g53550--3e-17At5g55850NOIO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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