Co-expression analysis

Gene ID Contig19081_at
Gene name
Homology with ArabidopsisSimilar to At5g53550: YSL3 (YELLOW STRIPE LIKE 3) (HF=2e-3)
Module size 6 genes
NF 0.32
%ile 42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Contig19081_atContig19081--2e-3At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.4053.10.97Contig2849_atContig2849--2e-1At1g23170unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig11702_atContig11702--4e-2At1g06150transcription factorO.I.H.G.S.X.
0.4053.10.97Contig16602_atContig16602--2e+0At5g23035-O.I.H.G.S.X.
0.3647.10.96Contig23109_atContig23109--2e+0At5g67245unknown proteinO.I.H.G.S.X.
0.1311.60.97Contig3408_atContig3408--1e-26At3g27430PBB1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.499.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
8.498.8GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.398.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.998.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.498.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.998.3GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.998.3GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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