Co-expression analysis

Gene ID Contig19027_at
Gene name
Homology with ArabidopsisSimilar to At5g05290: ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) (HF=1e+0)
Module size 6 genes
NF 0.58
%ile 80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.96Contig19027_atContig19027--1e+0At5g05290ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)O.I.H.G.S.X.
0.7388.70.96Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.
0.5674.30.96Contig20382_atContig20382--4e-1At1g53910RAP2.12O.I.H.G.S.X.
0.5572.00.96Contig15852_atContig15852--1e-33At1g29940NRPA2O.I.H.G.S.X.
0.5066.90.96Contig18946_atContig18946--1e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.4255.20.97Contig16664_atContig16664--3e-8At1g73180eukaryotic translation initiation factor-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.94Contig26442_atContig26442--4e+0At4g35480RHA3BO.I.H.G.S.X.
0.6077.30.95Contig23611_atContig23611--3e-7At5g27450MK (MEVALONATE KINASE)O.I.H.G.S.X.
0.5572.00.95Contig1035_atContig1035--6e-58At4g02890UBQ14O.I.H.G.S.X.
0.5066.90.94Contig20582_atContig20582--2e+0At5g38020S-adenosyl-L-methionine:carboxyl methyltransferase family proteinO.I.H.G.S.X.
0.5066.90.96Contig1778_s_atContig1778--2e+0At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.
0.5066.90.96Contig16251_atContig16251--2e-2At1g74140-O.I.H.G.S.X.
0.4762.20.95Contig25830_atContig25830--5e+0At3g14480glycine/proline-rich proteinO.I.H.G.S.X.
0.4661.00.95Contig24925_atContig24925--2e+0At3g27835-O.I.H.G.S.X.
0.4661.00.95Contig9691_atContig9691--6e-3At4g36830GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.4661.00.94HVSMEk0003I10r2_atHVSMEk0003I10r2--2e+1At5g44730haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4458.90.94HV_CEb0001E04r2_s_atHV_CEb0001E04r2--3e+0At5g01015unknown proteinO.I.H.G.S.X.
0.4458.90.94HU14I20u_atHU14I20u--1e+0At5g41765unknown proteinO.I.H.G.S.X.
0.4458.90.94Contig24995_atContig24995--1e+0At1g53850PAE1O.I.H.G.S.X.
0.4458.90.95Contig16786_atContig16786--4e+0At3g58550protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4458.90.96Contig21025_atContig21025--7e-2At2g16340unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig200_atContig200--2e-121At1g70490ARFA1DO.I.H.G.S.X.
0.4356.40.95Contig13096_atContig13096--3e-9At1g14360UTR3 (UDP-GALACTOSE TRANSPORTER 3)O.I.H.G.S.X.
0.4356.40.95Contig6251_atContig6251--3e+0At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.4356.40.95Contig8595_atContig8595--2e-13At3g14930HEME1O.I.H.G.S.X.
0.4053.10.94Contig25687_atContig25687--8e+0At5g13720-O.I.H.G.S.X.
0.4053.10.94Contig179_s_atContig179--4e+0At5g65360histone H3O.I.H.G.S.X.
0.4053.10.95Contig21517_atContig21517--3e-8At5g45300BMY2 (BETA-AMYLASE 2)O.I.H.G.S.X.
0.4053.10.95Contig19853_atContig19853--5e+0At5g11220unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig15126_atContig15126--5e-2At1g04590-O.I.H.G.S.X.
0.4053.10.96Contig21026_atContig21026--2e+0At2g30870GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)O.I.H.G.S.X.
0.4053.10.97Contig21045_atContig21045--4e+0At5g51130methyltransferaseO.I.H.G.S.X.
0.3849.50.95rbags12m22_atrbags12m22--3e-1At5g51280DEAD-box protein abstrakt, putativeO.I.H.G.S.X.
0.3849.50.95Contig7760_s_atContig7760--7e-1At3g30350unknown proteinO.I.H.G.S.X.
0.3849.50.96Contig10253_atContig10253--3e-1At1g51745-O.I.H.G.S.X.
0.3647.10.95Contig3423_atContig3423--3e-1At5g57120-O.I.H.G.S.X.
0.3647.10.96Contig5416_s_atContig5416--9e-1At1g51140basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3647.10.96Contig15038_atContig15038--4e-1At5g14030translocon-associated protein beta (TRAPB) family proteinO.I.H.G.S.X.
0.3342.60.93HVSMEf0017F17r2_atHVSMEf0017F17r2--3e+0At4g36470S-adenosyl-L-methionine:carboxyl methyltransferase family proteinO.I.H.G.S.X.
0.3342.60.93Contig12256_atContig12256--2e-10At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3342.60.93HV_CEb0009D09r2_atHV_CEb0009D09r2--1e+0At3g04945LCR18 (Low-molecular-weight cysteine-rich 18)O.I.H.G.S.X.
0.3342.60.95Contig19664_s_atContig19664--1e+0At4g01600GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.3342.60.95Contig17046_atContig17046--9e-2At1g61920unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig16273_atContig16273--3e-6At4g02600MLO1O.I.H.G.S.X.
0.3342.60.96Contig13484_atContig13484--7e+0At5g35631unknown proteinO.I.H.G.S.X.
0.3240.30.94rbags19i06_atrbags19i06--2e-17At5g05920DHS (DEOXYHYPUSINE SYNTHASE)O.I.H.G.S.X.
0.3240.30.96Contig1445_atContig1445--5e-3At3g49390CID10O.I.H.G.S.X.
0.3240.30.96Contig11673_atContig11673--7e-8At2g35720DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3138.60.94Contig1978_atContig1978--1e-53At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)O.I.H.G.S.X.
0.3138.60.95EBem06_SQ004_E07_s_atEBem06_SQ004_E07--3e+0At4g15140unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig17435_atContig17435--9e-2At1g75980-O.I.H.G.S.X.
0.3138.60.96HU05L13u_atHU05L13u--2e-1At2g39445-O.I.H.G.S.X.
0.3138.60.96Contig9392_atContig9392--5e+0At5g62780DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3037.00.94Contig14867_atContig14867--3e-3At1g27595-O.I.H.G.S.X.
0.3037.00.94Contig11844_atContig11844--2e+0At2g05645unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig21277_atContig21277--8e-12At1g26850dehydration-responsive family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.298.5GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.898.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.097.9GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.697.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.397.4GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.297.4GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.297.4GSM372987genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.897.0GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.897.0GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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