Co-expression analysis

Gene ID	Contig19027_at
Gene name
Homology with Arabidopsis	Similar to At5g05290: ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) (HF=1e+0)
Module size	6 genes
NF	0.58
%ile	80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.96	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig11674_at	Contig11674	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig18946_at	Contig18946	-	-	1e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.8	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.6	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.2	97.4	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8	97.0	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.83668.1.S1_at, orthologous to the query gene, Contig19027_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	GmaAffx.83668.1.S1_at	At5g05290	-	-	3e-21	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.68770.2.S1_at	At5g05290	-	-	7e-5	At2g05790	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.21473.1.S1_at	At5g05290	-	-	1e-9	At2g33860	ETT (ETTIN)	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.74676.1.S1_at	At5g05290	-	-	1e-90	At2g21050	amino acid permease, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.54511.1.S1_at	At5g05290	-	-	9e-1	At5g05950	MEE60 (maternal effect embryo arrest 60)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.46027.1.S1_at	At5g05290	-	-	1e-3	At4g24610	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.575.2.S1_at	At5g05290	-	-	2e-1	At3g42390	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.45619.1.S1_at	At5g05290	-	-	1e+0	At3g27680	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.80519.1.S1_at	At5g05290	-	-	8e-1	At2g30115	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.8163.1.A1_at	At5g05290	-	-	3e-1	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.83874.1.S1_at	At5g05290	-	-	5e+0	At2g37100	protamine P1 family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.16320.1.S1_at	At5g05290	-	-	3e-29	At1g02730	ATCSLD5	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.4844.1.S1_at	At5g05290	-	-	4e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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