Co-expression analysis

Gene ID Contig19021_at
Gene name
Homology with ArabidopsisSimilar to At1g78650: POLD3 (HF=9e-8)
Module size 7 genes
NF 0.50
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.94Contig19021_atContig19021--9e-8At1g78650POLD3O.I.H.G.S.X.
0.6784.70.94Contig11462_atContig11462--8e-5At5g41770crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.6380.30.94HV_CEa0017M22f_atHV_CEa0017M22f--1e+1At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.5066.90.93HV_CEa0008J10r2_atHV_CEa0008J10r2--4e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.4762.20.94Contig306_s_atContig306--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.
0.3849.50.95HV_CEa0008P09r2_s_atHV_CEa0008P09r2--1e+0At5g35520MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)O.I.H.G.S.X.
0.2427.20.94Contig20268_atContig20268--4e-1At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.3GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.595.1GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.294.3GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.294.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
3.194.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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