Co-expression analysis

Gene ID	Contig189_s_at
Gene name
Homology with Arabidopsis	Similar to At2g34420: LHB1B2 (HF=2e-34)
Module size	6 genes
NF	0.03
%ile	4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.76	Contig189_s_at	Contig189	-	-	2e-34	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig1013_s_at	Contig1013	-	-	2e-149	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.93	Contig5740_at	Contig5740	-	-	7e-5	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.94	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig13081_at	Contig13081	-	-	9e-2	At3g25573	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.92	HX14H18r_at	HX14H18r	-	-	3e-1	At1g07880	ATMPK13	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.2	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.0	97.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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