Co-expression analysis

Gene ID Contig18921_at
Gene name
Homology with ArabidopsisSimilar to At1g49520: SWIB complex BAF60b domain-containing protein (HF=1e+0)
Module size 6 genes
NF 0.39
%ile 52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.89Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.6784.70.89Contig1648_atContig1648--3e-18At1g66200ATGSR2O.I.H.G.S.X.
0.6077.30.90HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.3647.10.84Contig2809_atContig2809--5e-1At1g21550calcium-binding protein, putativeO.I.H.G.S.X.
0.2835.50.89HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.1210.40.89Contig15957_atContig15957--3e+0At5g07100WRKY26O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.599.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.799.5GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
9.999.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.797.7GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.697.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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