Co-expression analysis

Gene ID	Contig18921_at
Gene name
Homology with Arabidopsis	Similar to At1g49520: SWIB complex BAF60b domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.39
%ile	52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.89	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.90	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.84	Contig2809_at	Contig2809	-	-	5e-1	At1g21550	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.89	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.89	Contig15957_at	Contig15957	-	-	3e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7	99.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.9	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.6	97.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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