Co-expression analysis

Gene ID	Contig18868_at
Gene name
Homology with Arabidopsis	Similar to At4g01023: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)
Module size	6 genes
NF	0.58
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig18868_at	Contig18868	-	-	6e-1	At4g01023	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig2411_at	Contig2411	-	-	2e-2	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig14520_at	Contig14520	-	-	6e+0	At5g01230	FtsJ-like methyltransferase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9	97.1	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.8	95.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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