Co-expression analysis

Gene ID Contig18823_at
Gene name
Homology with ArabidopsisSimilar to At3g05290: PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) (HF=1e-2)
Module size 16 genes
NF 0.29
%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.94Contig18823_atContig18823--1e-2At3g05290PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)O.I.H.G.S.X.
0.4863.20.95Contig6765_atContig6765--2e-25At5g12860DiT1 (dicarboxylate transporter 1)O.I.H.G.S.X.
0.4356.40.95Contig5144_atContig5144--7e-14At5g27470seryl-tRNA synthetase / serine--tRNA ligaseO.I.H.G.S.X.
0.3849.50.95rbags22i06_atrbags22i06--1e-3At2g23140binding / ubiquitin-protein ligaseO.I.H.G.S.X.
0.3849.50.96Contig5295_atContig5295--2e-113At2g27210kelch repeat-containing serine/threonine phosphoesterase family proteinO.I.H.G.S.X.
0.3545.10.95Contig6945_atContig6945--3e-12At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.3240.30.96Contig8826_atContig8826--4e+0At3g58830haloacid dehalogenase (HAD) superfamily proteinO.I.H.G.S.X.
0.2935.50.96Contig6946_atContig6946--1e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.2630.40.95Contig12065_atContig12065--1e+0At5g61670-O.I.H.G.S.X.
0.2528.90.96Contig4599_s_atContig4599--2e-1At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)O.I.H.G.S.X.
0.2427.20.95Contig12717_atContig12717--2e-4At5g60990DEAD/DEAH box helicase, putative (RH10)O.I.H.G.S.X.
0.2427.20.97Contig7725_atContig7725--8e-1At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.2224.20.95Contig6569_atContig6569--1e-56At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.
0.2224.20.96Contig10643_atContig10643--1e-1At1g48140dolichol-phosphate mannosyltransferase-relatedO.I.H.G.S.X.
0.1615.30.95Contig7848_atContig7848--3e-5At3g22110PAC1O.I.H.G.S.X.
0.1311.60.95Contig12335_atContig12335--5e-20At2g22120protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.7GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.795.5GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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