Co-expression analysis

Gene ID	Contig18823_at
Gene name
Homology with Arabidopsis	Similar to At3g05290: PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) (HF=1e-2)
Module size	16 genes
NF	0.29
%ile	37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig18823_at	Contig18823	-	-	1e-2	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig6765_at	Contig6765	-	-	2e-25	At5g12860	DiT1 (dicarboxylate transporter 1)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig5144_at	Contig5144	-	-	7e-14	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	rbags22i06_at	rbags22i06	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig6945_at	Contig6945	-	-	3e-12	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig4599_s_at	Contig4599	-	-	2e-1	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig12717_at	Contig12717	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.97	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig6569_at	Contig6569	-	-	1e-56	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig10643_at	Contig10643	-	-	1e-1	At1g48140	dolichol-phosphate mannosyltransferase-related	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig7848_at	Contig7848	-	-	3e-5	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.7	95.5	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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