Co-expression analysis

Gene ID Contig18811_at
Gene name
Homology with ArabidopsisSimilar to At3g06435: Expressed protein (HF=6e-1)
Module size 6 genes
NF 0.24
%ile 30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4661.00.88Contig18811_atContig18811--6e-1At3g06435Expressed proteinO.I.H.G.S.X.
0.4356.40.90Contig19745_s_atContig19745--4e+0At5g44430PDF1.2c (plant defensin 1.2c)O.I.H.G.S.X.
0.2935.50.91Contig17251_s_atContig17251--1e+1At4g33355lipid bindingO.I.H.G.S.X.
0.2224.20.88Contig1906_atContig1906--2e-16At4g12780heat shock protein bindingO.I.H.G.S.X.
0.1818.20.90HS09L05u_atHS09L05u--4e+0At5g45350proline-rich family proteinO.I.H.G.S.X.
0.119.40.90HV_CEa0006F12r2_s_atHV_CEa0006F12r2--9e-1At1g71470unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.9100.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.399.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.099.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
8.998.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.497.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage