Co-expression analysis

Gene ID	Contig18811_at
Gene name
Homology with Arabidopsis	Similar to At3g06435: Expressed protein (HF=6e-1)
Module size	6 genes
NF	0.24
%ile	30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.88	Contig18811_at	Contig18811	-	-	6e-1	At3g06435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.90	Contig19745_s_at	Contig19745	-	-	4e+0	At5g44430	PDF1.2c (plant defensin 1.2c)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.91	Contig17251_s_at	Contig17251	-	-	1e+1	At4g33355	lipid binding	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.88	Contig1906_at	Contig1906	-	-	2e-16	At4g12780	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.90	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.90	HV_CEa0006F12r2_s_at	HV_CEa0006F12r2	-	-	9e-1	At1g71470	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
56.9	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.9	98.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.4	97.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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