Co-expression analysis

Gene ID Contig18777_at
Gene name
Homology with ArabidopsisSimilar to At3g45275: - (HF=5e-1)
Module size 6 genes
NF 0.72
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.81Contig18777_atContig18777--5e-1At3g45275-O.I.H.G.S.X.
0.8394.00.80Contig21006_atContig21006--6e-3Atmg00820-O.I.H.G.S.X.
0.7388.70.80Contig4483_s_atContig4483--2e+1At5g4152040S ribosomal protein S10 (RPS10B)O.I.H.G.S.X.
0.6784.70.85Contig4481_s_atContig4481--2e-75At1g08200AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)O.I.H.G.S.X.
0.6784.70.87Contig12785_atContig12785fatty acid hydroperoxide lyase-6e+0At4g18280glycine-rich cell wall protein-relatedO.I.H.G.S.X.
0.4458.90.76Contig20142_atContig20142--3e+0At1g35430unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.999.8GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
20.599.7GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.398.8GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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