CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18744_at

Gene name
Homology with Arabidopsis Similar to At5g41630: F-box family protein (HF=2e+0)

Module size 6 genes

NF 0.62

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig18744_at Contig18744 - - 2e+0 At5g41630 F-box family protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig16455_at Contig16455 - - 1e-1 At3g46880 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 HY03E10u_s_at HY03E10u - - 1e+1 At5g63060 transporter O.I. H.G. S.X.
0.50 66.9 0.97 Contig1139_s_at Contig1139 - - 1e-19 At3g07110 60S ribosomal protein L13A (RPL13aA) O.I. H.G. S.X.
0.50 66.9 0.97 Contig841_x_at Contig841 - - 1e-35 At2g34420 LHB1B2 O.I. H.G. S.X.
0.46 61.0 0.97 Contig26395_at Contig26395 - - 5e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.
0.46	61.0	0.97	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	92.5	0.96	HY03J09u_at	HY03J09u	-	-	3e+0	At4g26910	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.
0.80	92.5	0.96	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.96	Contig20206_at	Contig20206	-	-	6e-3	At1g73010	phosphatase	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig17838_at	Contig17838	-	-	5e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig19663_at	Contig19663	-	-	9e-2	At5g03320	protein kinase, putative	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig22308_at	Contig22308	-	-	4e-1	At3g49880	glycosyl hydrolase family protein 43	O.I.	H.G.	S.X.
0.67	84.7	0.97	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.63	80.3	0.96	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.
0.61	78.7	0.94	Contig19320_at	Contig19320	-	-	9e-1	At1g06475	unknown protein	O.I.	H.G.	S.X.
0.61	78.7	0.95	HA10P09u_at	HA10P09u	-	-	2e-2	At2g10965	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.96	Contig20626_at	Contig20626	-	-	4e+0	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	O.I.	H.G.	S.X.
0.60	77.3	0.96	Contig22516_at	Contig22516	-	-	4e-1	At1g51300	acyl-protein thioesterase-related	O.I.	H.G.	S.X.
0.60	77.3	0.96	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	O.I.	H.G.	S.X.
0.57	74.9	0.95	Contig21170_at	Contig21170	-	-	8e+0	At5g56910	-	O.I.	H.G.	S.X.
0.57	74.9	0.95	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig12495_at	Contig12495	-	-	4e-11	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.
0.56	74.3	0.95	Contig15430_at	Contig15430	-	-	1e-14	At3g08590	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	O.I.	H.G.	S.X.
0.55	72.0	0.97	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.
0.53	69.7	0.94	Contig25839_at	Contig25839	-	-	1e+0	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig15122_at	Contig15122	-	-	3e+0	At3g58910	F-box family protein	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig16047_at	Contig16047	-	-	5e-6	At4g16060	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	HVSMEi0013I18f_at	HVSMEi0013I18f	-	-	2e+0	At3g30456	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig12831_at	Contig12831	-	-	2e+0	At2g45410	LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig8413_s_at	Contig8413	-	-	6e-1	At4g02733	-	O.I.	H.G.	S.X.
0.50	66.9	0.95	HY09B17u_at	HY09B17u	-	-	4e+0	At4g01110	-	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig26597_at	Contig26597	-	-	9e-2	At5g47330	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig11073_at	Contig11073	-	-	2e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig19304_at	Contig19304	-	-	3e+0	At3g56520	no apical meristem (NAM) family protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	HT09B14u_s_at	HT09B14u	-	-	3e+0	At3g55580	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig17597_at	Contig17597	-	-	6e+0	At5g61100	-	O.I.	H.G.	S.X.
0.48	63.2	0.95	Contig21223_at	Contig21223	-	-	1e-7	At4g15930	microtubule motor	O.I.	H.G.	S.X.
0.48	63.2	0.96	HT05P07u_s_at	HT05P07u	-	-	3e+0	At1g32585	VQ motif-containing protein-related	O.I.	H.G.	S.X.
0.46	61.0	0.94	Contig16199_at	Contig16199	-	-	8e+0	At5g67610	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.95	HY02L18u_at	HY02L18u	-	-	4e+0	At5g14920	gibberellin-regulated family protein	O.I.	H.G.	S.X.
0.46	61.0	0.96	Contig24670_at	Contig24670	-	-	1e+0	At5g21910	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.96	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig22145_at	Contig22145	-	-	7e+0	At4g10260	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig1193_at	Contig1193	-	-	2e-2	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.
0.44	58.9	0.95	HS18J21u_at	HS18J21u	-	-	1e+0	At1g64200	VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig2310_at	Contig2310	-	-	4e-22	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig491_s_at	Contig491	-	-	2e-11	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig5140_at	Contig5140	-	-	3e-5	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig7446_at	Contig7446	-	-	3e-1	At4g24240	WRKY7	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig8495_at	Contig8495	-	-	2e-5	At2g24740	SDG21 (SET DOMAIN GROUP 21)	O.I.	H.G.	S.X.
0.44	58.9	0.97	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.
0.43	56.4	0.95	Contig7845_at	Contig7845	-	-	6e-1	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.
0.43	56.4	0.96	rbags21n02_at	rbags21n02	-	-	3e-1	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig17026_at	Contig17026	-	-	1e+0	At1g01770	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 98.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
4.3 96.4 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
4.1 96.2 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
3.7 95.5 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
3.4 94.8 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
3.3 94.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM146357 Golden Promise Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2 94.3 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.4	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig18744_at
Gene name
Homology with Arabidopsis	Similar to At5g41630: F-box family protein (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expression analysis

Gene ID Contig18744_at Gene name Homology with ArabidopsisSimilar to At5g41630: F-box family protein (HF=2e+0) Module size 6 genes NF 0.62 %ile 84.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig18744_at

Gene name
Homology with Arabidopsis Similar to At5g41630: F-box family protein (HF=2e+0)

Module size 6 genes

NF 0.62

%ile 84.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays