Co-expression analysis

Gene ID	Contig18744_at
Gene name
Homology with Arabidopsis	Similar to At5g41630: F-box family protein (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

A co-expression module including the grape gene, 1616472_at, orthologous to the query gene, Contig18744_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1616472_at	At5g41630	hypothetical protein LOC100260255	-	1e+0	At5g36140	CYP716A2	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615471_at	At5g41630	hypothetical protein LOC100263916	-	5e-60	At1g74380	XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1618842_at	At5g41630	similar to TIP1 (TIP GROWTH DEFECTIVE 1)	-	4e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622572_at	At5g41630	hypothetical protein LOC100267936	-	2e-2	At1g02550	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621219_at	At5g41630	hypothetical protein LOC100246961	-	1e-5	At3g62260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	1617809_at	At5g41630	hypothetical protein LOC100250258	-	1e+0	At2g04890	SCL21 (SCARECROW-LIKE 21)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1610218_s_at	At5g41630	hypothetical protein LOC100261061	-	6e-22	At5g15490	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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