Co-expression analysis

Gene ID	Contig18703_at
Gene name
Homology with Arabidopsis	Similar to At5g48205: zinc ion binding (HF=1e+0)
Module size	6 genes
NF	0.68
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.98	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	99.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
9.4	99.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.438.1.S1_at, orthologous to the query gene, Contig18703_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	Zm.438.1.S1_at	At5g48205	heat-shock protein 101	-	3e-14	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.14923.1.S1_at	At5g48205	Diacylglycerol kinase 1	-	1e-16	At5g07920	DGK1 (DIACYLGLYCEROL KINASE1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.8283.1.S1_at	At5g48205	hypothetical protein LOC100276098	-	7e-1	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5046.1.S1_at	At5g48205	hypothetical protein LOC100191234 /// hypothetical protein LOC100273435	-	3e-19	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.13942.1.A1_at	At5g48205	hypothetical protein LOC100279675	-	2e-6	At4g00585	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.10771.1.A1_at	At5g48205	hypothetical protein LOC100272564	-	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.18092.1.A1_at	At5g48205	-	-	6e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.2403.1.A1_at	At5g48205	-	-	3e+0	At4g14385	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.17147.1.A1_at	At5g48205	ADP-glucose pyrophosphorylase small subunit	-	6e-82	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.5020.1.S1_at	At5g48205	hypothetical protein LOC100216870	-	1e-5	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.3786.1.S1_at	At5g48205	hypothetical protein LOC100273838	-	3e-3	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.7777.1.A1_at	At5g48205	F-box domain containing protein	-	5e+0	At5g60964	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.561.1.A1_at	At5g48205	glutathione transferase23	-	5e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.10294.1.S1_at	At5g48205	-	-	2e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.13808.1.S1_at	At5g48205	hypothetical protein LOC100279847	-	6e-4	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.888.1.S1_at	At5g48205	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.16102.1.A1_at	At5g48205	-	-	8e-9	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.523.1.A1_at	At5g48205	-	-	3e+0	At3g54363	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.5912.1.S1_at	At5g48205	hypothetical protein LOC100191374	-	2e+0	At3g24508	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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