CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18703_at

Gene name
Homology with Arabidopsis Similar to At5g48205: zinc ion binding (HF=1e+0)

Module size 6 genes

NF 0.68

%ile 89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding O.I. H.G. S.X.
0.67 84.7 0.98 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 77.3 0.98 HS18F06u_s_at HS18F06u - - 7e-14 At2g47610 60S ribosomal protein L7A (RPL7aA) O.I. H.G. S.X.
0.55 72.0 0.98 EBem09_SQ001_B21_s_at EBem09_SQ001_B21 - - 2e+0 At5g36920 unknown protein O.I. H.G. S.X.
0.50 66.9 0.98 Contig16972_at Contig16972 - - 5e-10 At5g64813 LIP1 (Light Insensitive Period1) O.I. H.G. S.X.
0.46 61.0 0.98 rbags18e07_s_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.60	77.3	0.98	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.
0.55	72.0	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.98	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.
0.46	61.0	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.7 99.0 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
9.4 99.0 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.7	99.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
9.4	99.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.1751.1.S1_at, orthologous to the query gene, Contig18703_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.8 Ptp.1751.1.S1_at At5g48205 hypothetical protein - 2e-17 At2g44770 phagocytosis and cell motility protein ELMO1-related O.I. H.G. S.X.
0.40 67.0 Ptp.421.1.A1_at At5g48205 precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 - 9e-64 At3g16950 LPD1 (LIPOAMIDE DEHYDROGENASE 1) O.I. H.G. S.X.
0.38 63.7 PtpAffx.8815.2.A1_a_at At5g48205 ABC transporter family protein - 3e-14 At5g39040 ATTAP2 O.I. H.G. S.X.
0.37 62.3 Ptp.911.1.S1_at At5g48205 hypothetical protein - 4e-2 At4g19700 RING O.I. H.G. S.X.
0.37 62.3 PtpAffx.13846.1.S1_at At5g48205 hypothetical protein - 1e-48 At1g63000 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) O.I. H.G. S.X.
0.36 61.6 PtpAffx.211412.1.S1_at At5g48205 hypothetical protein - 6e-1 At4g01560 MEE49 (maternal effect embryo arrest 49) O.I. H.G. S.X.
0.36 61.6 PtpAffx.204623.1.S1_at At5g48205 hypothetical protein - 3e-142 At1g49340 ATPI4K ALPHA O.I. H.G. S.X.
0.35 59.7 PtpAffx.130641.1.S1_s_at At5g48205 hypothetical protein - 2e-18 At3g45850 kinesin motor protein-related O.I. H.G. S.X.
0.34 58.3 PtpAffx.205805.1.S1_at At5g48205 hypothetical protein - 2e-39 At2g21410 VHA-A2 (VACUOLAR PROTON ATPASE A2) O.I. H.G. S.X.
0.32 55.2 PtpAffx.54064.1.S1_s_at At5g48205 hypothetical protein - 3e-71 At1g14830 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) O.I. H.G. S.X.
0.32 55.2 PtpAffx.13110.1.S1_s_at At5g48205 nucleosome/chromatin assembly factor group - 2e-5 At4g29730 NFC5 (Nucleosome/chromatin assembly factor group C 5) O.I. H.G. S.X.
0.31 53.7 PtpAffx.128071.1.A1_at At5g48205 hypothetical protein - 3e-5 At5g23130 peptidoglycan-binding LysM domain-containing protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.211876.1.S1_at At5g48205 hypothetical protein - 7e-26 At3g21610 - O.I. H.G. S.X.
0.30 52.0 PtpAffx.135649.1.S1_s_at At5g48205 hypothetical protein - 1e+0 At3g17350 unknown protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.88257.1.S1_at At5g48205 hypothetical protein - 6e-3 At3g56640 exocyst complex subunit Sec15-like family protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.11524.3.S1_at At5g48205 hypothetical protein - 4e-28 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative O.I. H.G. S.X.
0.29 50.5 PtpAffx.215818.1.S1_x_at At5g48205 hypothetical protein - 7e-9 At3g19260 LOH2 (LAG ONE HOMOLOGUE 2) O.I. H.G. S.X.
0.28 50.5 PtpAffx.249.93.S1_at At5g48205 hypothetical protein - 0 At5g13490 AAC2 (ADP/ATP carrier 2) O.I. H.G. S.X.
0.28 50.5 Ptp.6324.1.S1_at At5g48205 hypothetical protein - 1e-1 At2g07020 protein kinase family protein O.I. H.G. S.X.
0.28 50.5 PtpAffx.204876.1.S1_s_at At5g48205 hypothetical protein - 3e-127 At5g12480 CPK7 (calmodulin-domain protein kinase 7) O.I. H.G. S.X.
0.27 47.1 PtpAffx.216976.1.S1_x_at At5g48205 hypothetical protein - 2e-29 At3g24530 AAA-type ATPase family protein / ankyrin repeat family protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.59548.1.S1_at At5g48205 - - 3e-18 At1g10740 unknown protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.65166.1.S1_at At5g48205 hypothetical protein - 2e-28 At2g45670 calcineurin B subunit-related O.I. H.G. S.X.
0.25 43.6 Ptp.5655.1.S1_at At5g48205 hypothetical protein - 1e-73 At3g51460 RHD4 (ROOT HAIR DEFECTIVE4) O.I. H.G. S.X.
0.24 41.8 Ptp.1973.1.S1_at At5g48205 hypothetical protein - 7e-49 At2g33220 - O.I. H.G. S.X.
0.24 41.8 Ptp.1673.1.A1_at At5g48205 hypothetical protein - 1e-3 At5g65470 unknown protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.210790.1.S1_s_at At5g48205 hypothetical protein - 4e-27 At4g25360 - O.I. H.G. S.X.
0.23 40.5 PtpAffx.54265.1.S1_s_at At5g48205 hypothetical protein - 4e-7 At3g19260 LOH2 (LAG ONE HOMOLOGUE 2) O.I. H.G. S.X.
0.23 40.5 PtpAffx.47734.1.S1_s_at At5g48205 hypothetical protein - 3e-34 At1g59650 CW14 O.I. H.G. S.X.
0.20 34.6 Ptp.2670.1.S1_at At5g48205 hypothetical protein - 7e-12 At4g33140 unknown protein O.I. H.G. S.X.
0.20 34.6 PtpAffx.13443.2.S1_at At5g48205 - - 3e-1 At1g61160 - O.I. H.G. S.X.
0.18 30.8 Ptp.3480.1.S1_s_at At5g48205 hypothetical protein - 3e-21 At3g29360 UDP-glucose 6-dehydrogenase, putative O.I. H.G. S.X.
0.18 30.8 Ptp.1277.1.S1_x_at At5g48205 hypothetical protein - 2e-5 At1g51650 ATP synthase epsilon chain, mitochondrial O.I. H.G. S.X.
0.18 30.8 Ptp.5516.1.A1_at At5g48205 hypothetical protein - 2e-21 At2g35190 NPSN11 (NOVEL PLANT SNARE 11) O.I. H.G. S.X.
0.17 29.1 PtpAffx.249.93.S1_x_at At5g48205 hypothetical protein - 0 At5g13490 AAC2 (ADP/ATP carrier 2) O.I. H.G. S.X.
0.16 26.9 Ptp.5782.1.S1_at At5g48205 hypothetical protein - 2e-77 At5g47200 ATRAB1A O.I. H.G. S.X.
0.15 25.3 Ptp.6514.1.S1_s_at At5g48205 hypothetical protein - 7e-34 At3g15640 cytochrome c oxidase family protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.81427.1.S1_s_at At5g48205 hypothetical protein - 4e-25 At1g49340 ATPI4K ALPHA O.I. H.G. S.X.
0.14 23.5 PtpAffx.141537.1.A1_at At5g48205 hypothetical protein - 7e-12 At3g45090 2-phosphoglycerate kinase-related O.I. H.G. S.X.
0.14 23.5 PtpAffx.78476.1.A1_at At5g48205 hypothetical protein - 1e-4 At2g03690 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein O.I. H.G. S.X.
0.12 19.6 PtpAffx.9828.1.S1_at At5g48205 hypothetical protein - 3e-2 At4g33180 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.8	Ptp.1751.1.S1_at	At5g48205	hypothetical protein	-	2e-17	At2g44770	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.
0.40	67.0	Ptp.421.1.A1_at	At5g48205	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3	-	9e-64	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	O.I.	H.G.	S.X.
0.38	63.7	PtpAffx.8815.2.A1_a_at	At5g48205	ABC transporter family protein	-	3e-14	At5g39040	ATTAP2	O.I.	H.G.	S.X.
0.37	62.3	Ptp.911.1.S1_at	At5g48205	hypothetical protein	-	4e-2	At4g19700	RING	O.I.	H.G.	S.X.
0.37	62.3	PtpAffx.13846.1.S1_at	At5g48205	hypothetical protein	-	1e-48	At1g63000	NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)	O.I.	H.G.	S.X.
0.36	61.6	PtpAffx.211412.1.S1_at	At5g48205	hypothetical protein	-	6e-1	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.
0.36	61.6	PtpAffx.204623.1.S1_at	At5g48205	hypothetical protein	-	3e-142	At1g49340	ATPI4K ALPHA	O.I.	H.G.	S.X.
0.35	59.7	PtpAffx.130641.1.S1_s_at	At5g48205	hypothetical protein	-	2e-18	At3g45850	kinesin motor protein-related	O.I.	H.G.	S.X.
0.34	58.3	PtpAffx.205805.1.S1_at	At5g48205	hypothetical protein	-	2e-39	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	O.I.	H.G.	S.X.
0.32	55.2	PtpAffx.54064.1.S1_s_at	At5g48205	hypothetical protein	-	3e-71	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	O.I.	H.G.	S.X.
0.32	55.2	PtpAffx.13110.1.S1_s_at	At5g48205	nucleosome/chromatin assembly factor group	-	2e-5	At4g29730	NFC5 (Nucleosome/chromatin assembly factor group C 5)	O.I.	H.G.	S.X.
0.31	53.7	PtpAffx.128071.1.A1_at	At5g48205	hypothetical protein	-	3e-5	At5g23130	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.211876.1.S1_at	At5g48205	hypothetical protein	-	7e-26	At3g21610	-	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.135649.1.S1_s_at	At5g48205	hypothetical protein	-	1e+0	At3g17350	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.88257.1.S1_at	At5g48205	hypothetical protein	-	6e-3	At3g56640	exocyst complex subunit Sec15-like family protein	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.11524.3.S1_at	At5g48205	hypothetical protein	-	4e-28	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.215818.1.S1_x_at	At5g48205	hypothetical protein	-	7e-9	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	O.I.	H.G.	S.X.
0.28	50.5	PtpAffx.249.93.S1_at	At5g48205	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.
0.28	50.5	Ptp.6324.1.S1_at	At5g48205	hypothetical protein	-	1e-1	At2g07020	protein kinase family protein	O.I.	H.G.	S.X.
0.28	50.5	PtpAffx.204876.1.S1_s_at	At5g48205	hypothetical protein	-	3e-127	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.216976.1.S1_x_at	At5g48205	hypothetical protein	-	2e-29	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.59548.1.S1_at	At5g48205	-	-	3e-18	At1g10740	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.65166.1.S1_at	At5g48205	hypothetical protein	-	2e-28	At2g45670	calcineurin B subunit-related	O.I.	H.G.	S.X.
0.25	43.6	Ptp.5655.1.S1_at	At5g48205	hypothetical protein	-	1e-73	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	O.I.	H.G.	S.X.
0.24	41.8	Ptp.1973.1.S1_at	At5g48205	hypothetical protein	-	7e-49	At2g33220	-	O.I.	H.G.	S.X.
0.24	41.8	Ptp.1673.1.A1_at	At5g48205	hypothetical protein	-	1e-3	At5g65470	unknown protein	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.210790.1.S1_s_at	At5g48205	hypothetical protein	-	4e-27	At4g25360	-	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.54265.1.S1_s_at	At5g48205	hypothetical protein	-	4e-7	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.47734.1.S1_s_at	At5g48205	hypothetical protein	-	3e-34	At1g59650	CW14	O.I.	H.G.	S.X.
0.20	34.6	Ptp.2670.1.S1_at	At5g48205	hypothetical protein	-	7e-12	At4g33140	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.13443.2.S1_at	At5g48205	-	-	3e-1	At1g61160	-	O.I.	H.G.	S.X.
0.18	30.8	Ptp.3480.1.S1_s_at	At5g48205	hypothetical protein	-	3e-21	At3g29360	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.
0.18	30.8	Ptp.1277.1.S1_x_at	At5g48205	hypothetical protein	-	2e-5	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.
0.18	30.8	Ptp.5516.1.A1_at	At5g48205	hypothetical protein	-	2e-21	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.249.93.S1_x_at	At5g48205	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.
0.16	26.9	Ptp.5782.1.S1_at	At5g48205	hypothetical protein	-	2e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.
0.15	25.3	Ptp.6514.1.S1_s_at	At5g48205	hypothetical protein	-	7e-34	At3g15640	cytochrome c oxidase family protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.81427.1.S1_s_at	At5g48205	hypothetical protein	-	4e-25	At1g49340	ATPI4K ALPHA	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.141537.1.A1_at	At5g48205	hypothetical protein	-	7e-12	At3g45090	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.78476.1.A1_at	At5g48205	hypothetical protein	-	1e-4	At2g03690	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	O.I.	H.G.	S.X.
0.12	19.6	PtpAffx.9828.1.S1_at	At5g48205	hypothetical protein	-	3e-2	At4g33180	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig18703_at
Gene name
Homology with Arabidopsis	Similar to At5g48205: zinc ion binding (HF=1e+0)
Module size	6 genes
NF	0.68
%ile	89.7

Co-expression analysis

Gene ID Contig18703_at Gene name Homology with ArabidopsisSimilar to At5g48205: zinc ion binding (HF=1e+0) Module size 6 genes NF 0.68 %ile 89.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig18703_at

Gene name
Homology with Arabidopsis Similar to At5g48205: zinc ion binding (HF=1e+0)

Module size 6 genes

NF 0.68

%ile 89.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays