Co-expression analysis

Gene ID	Contig18703_at
Gene name
Homology with Arabidopsis	Similar to At5g48205: zinc ion binding (HF=1e+0)
Module size	6 genes
NF	0.68
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.98	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	99.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
9.4	99.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.5940.1.S1_at, orthologous to the query gene, Contig18703_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	GmaAffx.5940.1.S1_at	At5g48205	-	-	7e-4	At3g03210	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.10916.1.S1_at	At5g48205	-	-	1e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.23184.2.A1_at	At5g48205	-	-	1e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.46118.1.A1_at	At5g48205	-	-	5e+0	At5g37910	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.4469.1.A1_at	At5g48205	-	-	3e+0	At5g43210	endo/excinuclease amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.7667.1.S1_at	At5g48205	-	-	2e-11	At4g24840	-	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.92671.1.S1_at	At5g48205	-	-	3e+0	At1g60913	-	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.5244.2.S1_at	At5g48205	-	-	1e-22	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.3929.1.A1_at	At5g48205	-	-	4e-10	At5g18400	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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