Co-expression analysis

Gene ID	Contig18674_at
Gene name
Homology with Arabidopsis	Similar to At1g67050: unknown protein (HF=5e-1)
Module size	7 genes
NF	0.40
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.95	Contig18674_at	Contig18674	-	-	5e-1	At1g67050	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	rbaal28o12_s_at	rbaal28o12	-	-	1e+0	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig15303_at	Contig15303	-	-	6e-1	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig3497_s_at	Contig3497	-	-	4e+0	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig18051_at	Contig18051	-	-	4e-1	At1g75250	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.1	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.4	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
18.8	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage