Co-expression analysis

Gene ID	Contig18641_at
Gene name
Homology with Arabidopsis	Similar to At1g68850: peroxidase, putative (HF=5e-4)
Module size	6 genes
NF	0.42
%ile	59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	S0001100116E08F1_x_at	S0001100116E08F1	-	-	1e+1	At3g29639	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.88	Contig25564_at	Contig25564	-	-	7e-1	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
58.5	100.0	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
14.8	99.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.4	98.5	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.5	98.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.2707.1.S1_at, orthologous to the query gene, Contig18641_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.2707.1.S1_at	At1g68850	-	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.13315.1.S1_at	At1g68850	pairing protein meu13-like	-	9e-15	At1g13330	-	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.15605.1.S1_at	At1g68850	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	O.I.	H.G.	S.X.	Please select
0.05	1.9	Zm.17740.1.A1_at	At1g68850	hypothetical protein LOC100277215	-	6e+0	At3g29797	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	Zm.10375.1.S1_at	At1g68850	-	-	2e-17	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	ZmAffx.988.1.S1_at	At1g68850	-	-	3e+0	At5g50562	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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