Co-expression analysis

Gene ID Contig18641_at
Gene name
Homology with ArabidopsisSimilar to At1g68850: peroxidase, putative (HF=5e-4)
Module size 6 genes
NF 0.42
%ile 59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.5066.90.87Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.5066.90.87Contig22190_s_atContig22190--4e-2At4g27745-O.I.H.G.S.X.
0.5066.90.87S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.
0.2326.10.88HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.1514.10.88Contig25564_atContig25564--7e-1At3g30220unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.5100.0GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
14.899.5GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.498.5GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
6.598.2GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.797.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.396.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM398249Martin_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2707.1.S1_at, orthologous to the query gene, Contig18641_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.2707.1.S1_atAt1g68850--2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.2216.9Zm.13315.1.S1_atAt1g68850pairing protein meu13-like-9e-15At1g13330-O.I.H.G.S.X.
0.062.3Zm.15605.1.S1_atAt1g68850isopenicillin N epimerase-2e-2At3g62130epimerase-relatedO.I.H.G.S.X.
0.051.9Zm.17740.1.A1_atAt1g68850hypothetical protein LOC100277215-6e+0At3g29797-O.I.H.G.S.X.
0.031.1Zm.10375.1.S1_atAt1g68850--2e-17At2g35360ubiquitin family proteinO.I.H.G.S.X.
0.031.1ZmAffx.988.1.S1_atAt1g68850--3e+0At5g50562unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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