Co-expression analysis

Gene ID Contig18641_at
Gene name
Homology with ArabidopsisSimilar to At1g68850: peroxidase, putative (HF=5e-4)
Module size 6 genes
NF 0.42
%ile 59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.5066.90.87Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.5066.90.87Contig22190_s_atContig22190--4e-2At4g27745-O.I.H.G.S.X.
0.5066.90.87S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.
0.2326.10.88HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.1514.10.88Contig25564_atContig25564--7e-1At3g30220unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.5100.0GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
14.899.5GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.498.5GSM311263kara_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
6.598.2GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.797.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.396.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM398249Martin_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0676900, orthologous to the query gene, Contig18641_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7893.4Os07g0676900At1g68850-Peroxidase (EC 1.11.1.7)6e-4At5g05340peroxidase, putativeO.I.H.G.S.X.
0.7692.2Os02g0653200At1g68850-Cupredoxin domain containing protein7e-3At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.6987.9Os05g0499300At1g68850-Peroxidase precursor (EC 1.11.1.7)7e-1At3g21770peroxidase 30 (PER30) (P30) (PRXR9)O.I.H.G.S.X.
0.6583.8Os02g0662000At1g68850-RCc3 protein1e-1At2g25820transcription factorO.I.H.G.S.X.
0.6483.4Os01g0263300At1g68850--4e-8At5g66390peroxidase 72 (PER72) (P72) (PRXR8)O.I.H.G.S.X.
0.5978.0Os07g0175600At1g68850-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein3e-2At3g22600protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5777.0Os01g0838200At1g68850-Conserved hypothetical protein1e+0At4g28025unknown proteinO.I.H.G.S.X.
0.5676.3Os02g0256200At1g68850-Conserved hypothetical protein1e-1At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.
0.5573.7Os10g0552800At1g68850-RCc3 protein9e-2At2g25820transcription factorO.I.H.G.S.X.
0.5573.7Os05g0517900At1g68850-Appr>p cyclic nucleotide phosphodiesterase domaincontaining protein1e-1At2g20515unknown proteinO.I.H.G.S.X.
0.5068.0Os05g0501300At1g68850-1,4-benzoquinone reductase5e-7At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.3032.7Os03g0245500At1g68850-Curculin-like (mannose-binding) lectin domaincontaining protein1e+1At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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