Co-expression analysis

Gene ID Contig18490_at
Gene name
Homology with ArabidopsisSimilar to At3g52870: calmodulin-binding family protein (HF=7e-5)
Module size 7 genes
NF 0.19
%ile 23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.40.90Contig18490_atContig18490--7e-5At3g52870calmodulin-binding family proteinO.I.H.G.S.X.
0.1818.20.94Contig21290_atContig21290--2e+0At5g01910unknown proteinO.I.H.G.S.X.
0.1514.10.93Contig21329_atContig21329--1e-1At5g47229unknown proteinO.I.H.G.S.X.
0.1311.60.93Contig16933_atContig16933--7e-1At5g05270chalcone-flavanone isomerase family proteinO.I.H.G.S.X.
0.1311.60.93Contig10716_atContig10716--6e+0At4g20420tapetum-specific protein-relatedO.I.H.G.S.X.
0.1210.40.93Contig24022_atContig24022--1e+0At5g51180unknown proteinO.I.H.G.S.X.
0.108.40.93Contig4365_atContig4365--5e-39At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.895.7GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.595.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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