Co-expression analysis

Gene ID Contig18430_at
Gene name
Homology with ArabidopsisSimilar to At1g18340: basal transcription factor complex subunit-related (HF=2e-2)
Module size 10 genes
NF 0.70
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.93Contig18430_atContig18430--2e-2At1g18340basal transcription factor complex subunit-relatedO.I.H.G.S.X.
0.9095.70.92HV12H12u_atHV12H12u--2e-45At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.7891.20.94Contig3565_s_atContig3565--2e-1At4g01430nodulin MtN21 family proteinO.I.H.G.S.X.
0.7689.80.93HO11K23S_s_atHO11K23S--4e+0At3g17420GPK1O.I.H.G.S.X.
0.7489.10.94Contig20065_atContig20065--4e-1At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.7388.70.94Contig13565_atContig13565--9e+0At4g29770-O.I.H.G.S.X.
0.6178.70.93Contig7635_s_atContig7635--3e-1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.6077.30.91Mla12DH_orf_3pri12_atMla12DH_orf_3pri12--6e-1At4g2362050S ribosomal protein-relatedO.I.H.G.S.X.
0.5774.90.93Contig6960_atContig6960--1e+0At4g29770-O.I.H.G.S.X.
0.4661.00.94Contig9578_s_atContig9578--9e-13At5g64030dehydration-responsive protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.696.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM372985genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM372988genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM372987genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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