Co-expression analysis

Gene ID	Contig18428_at
Gene name
Homology with Arabidopsis	Similar to At1g15060: - (HF=7e-7)
Module size	6 genes
NF	0.14
%ile	17.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.91	Contig18428_at	Contig18428	-	-	7e-7	At1g15060	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig11252_at	Contig11252	-	-	2e+0	At1g01130	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig11250_s_at	Contig11250	-	-	4e+0	At5g22810	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.91	Contig17794_at	Contig17794	-	-	3e-9	At2g30700	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	Contig11473_at	Contig11473	-	-	2e-27	At1g03000	PEX6 (PEROXIN 6)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	Contig20322_at	Contig20322	-	-	2e+0	At4g12860	UNE14 (unfertilized embryo sac 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	99.5	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.9	99.1	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.1	98.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.6	97.7	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
4.7	96.9	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
3.9	95.8	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage