Co-expression analysis

Gene ID	Contig18390_at
Gene name
Homology with Arabidopsis	Similar to At1g53110: - (HF=4e+0)
Module size	6 genes
NF	0.72
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig18390_at	Contig18390	-	-	4e+0	At1g53110	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.93	Contig12988_at	Contig12988	-	-	5e-1	At5g55970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	HM04K08u_s_at	HM04K08u	-	-	9e-1	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.90	Contig18923_at	Contig18923	-	-	2e+0	At3g47130	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig17917_at	Contig17917	-	-	5e+0	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig22228_at	Contig22228	-	-	1e-1	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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