Co-expression analysis

Gene ID	Contig18384_at
Gene name
Homology with Arabidopsis	Similar to At1g56233: - (HF=2e+0)
Module size	7 genes
NF	0.54
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	Contig18384_at	Contig18384	-	-	2e+0	At1g56233	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	HV_CEb0008L21r2_at	HV_CEb0008L21r2	-	-	2e+1	At5g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig17678_at	Contig17678	-	-	3e-4	At2g47330	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig25430_at	Contig25430	-	-	2e+0	At4g16410	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig26103_at	Contig26103	-	-	1e-1	At5g51580	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	rbags21o19_at	rbags21o19	-	-	3e-1	At5g26114	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HVSMEg0006E16f2_at	HVSMEg0006E16f2	-	-	3e+0	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.2	94.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.0	93.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.0	93.8	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM372977	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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