Co-expression analysis

Gene ID Contig18372_at
Gene name
Homology with ArabidopsisSimilar to At3g44490: hda17 (histone deacetylase 17) (HF=2e-6)
Module size 6 genes
NF 0.60
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.83Contig18372_atContig18372--2e-6At3g44490hda17 (histone deacetylase 17)O.I.H.G.S.X.
0.7790.80.83HF24C10r_atHF24C10r--1e+1At5g53610glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.7388.70.83Contig16847_atContig16847--2e+0At5g50890-O.I.H.G.S.X.
0.5369.70.86Contig8628_atContig8628--6e-1At1g64370unknown proteinO.I.H.G.S.X.
0.4762.20.83Contig10068_atContig10068--2e+0At3g54840ARA6O.I.H.G.S.X.
0.3342.60.84Contig6448_atContig6448--1e-2At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.599.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
26.899.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
18.299.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.399.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.999.1GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.799.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.498.1GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.697.7GSM372987genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.397.4GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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