Co-expression analysis

Gene ID Contig18328_at
Gene name
Homology with ArabidopsisSimilar to Atmg00110: - (HF=5e-1)
Module size 7 genes
NF 0.51
%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.96Contig18328_atContig18328--5e-1Atmg00110-O.I.H.G.S.X.
0.8394.00.96Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig25651_atContig25651--5e-1At2g41225unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig23171_atContig23171--2e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.4356.40.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4053.10.96Contig12656_s_atContig12656--8e+0At5g45830DOG1 (DELAY OF GERMINATION 1)O.I.H.G.S.X.
0.2732.10.96Contig20549_atContig20549--2e-27At2g39480PGP6 (P-GLYCOPROTEIN 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.799.9GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
23.199.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM160464drought control rep1GSE6990Barley drought stressLink to GEO
4.997.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.595.1GSM161220cold treatment rep2GSE6993Barley low temperature stressLink to GEO
3.394.6GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.294.3GSM261059Xantha b-12 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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