Co-expression analysis

Gene ID	Contig18246_at
Gene name
Homology with Arabidopsis	Similar to At4g27410: RD26 (RESPONSIVE TO DESICCATION 26) (HF=2e+0)
Module size	13 genes
NF	0.41
%ile	56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.95	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig4748_s_at	Contig4748	ribophorin I	-	2e-2	At1g76400	ribophorin I family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HU09E20u_s_at	HU09E20u	-	-	3e+0	At3g55820	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig4750_at	Contig4750	-	-	4e+0	At5g15360	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig4890_at	Contig4890	-	-	5e-4	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig8374_at	Contig8374	-	-	5e-1	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4413_s_at	Contig4413	-	-	7e+0	At2g40790	ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig19982_at	Contig19982	-	-	1e-4	At2g18400	ribosomal protein L6 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.2	94.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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