Co-expression analysis

Gene ID Contig18164_at
Gene name
Homology with ArabidopsisSimilar to At1g20920: DEAD box RNA helicase, putative (HF=1e-11)
Module size 6 genes
NF 0.62
%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.6784.70.98Contig22208_atContig22208--2e+0At1g02330-O.I.H.G.S.X.
0.6784.70.98Contig3992_atContig3992--1e-40At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.5066.90.98Contig25706_atContig25706--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.4661.00.96Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.4356.40.98Contig7079_atContig7079--3e-3At2g18980peroxidase, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.50.97Contig9121_atContig9121--3e-6At3g01550PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)O.I.H.G.S.X.
0.7187.10.96Contig22402_atContig22402potassium transporter HAK4-2e-8At3g02050KUP3 (K+ UPTAKE TRANSPORTER 3)O.I.H.G.S.X.
0.6380.30.94S0001100050A08F1_x_atS0001100050A08F1--6e-1At1g77440PBC2O.I.H.G.S.X.
0.5975.80.96Contig5182_atContig5182--9e-34At4g12590unknown proteinO.I.H.G.S.X.
0.5774.90.94Contig3625_atContig3625--8e-32At3g02630acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.5572.00.97Contig20916_atContig20916--3e-1At5g66160JR700O.I.H.G.S.X.
0.5369.70.97Contig5460_s_atContig5460--8e-3At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.5066.90.95Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.4863.20.81S0001100181F11F1_atS0001100181F11F1--1e+1At4g11060MTSSB (mitochondrially targeted single-stranded DNA binding protein)O.I.H.G.S.X.
0.4762.20.86HB26H24r_x_atHB26H24r--1e+1At5g21005unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig953_atContig953--2e+0At2g29050ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)O.I.H.G.S.X.
0.4661.00.96Contig25403_atContig25403--4e+0At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)O.I.H.G.S.X.
0.4661.00.97Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.4458.90.98Contig2544_atContig2544--1e+0At3g21890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4458.90.99Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.4255.20.93S0001000056K18F1_x_atS0001000056K18F1--7e-1At1g77440PBC2O.I.H.G.S.X.
0.4153.90.92Contig16646_atContig16646--6e-17At2g24990RIO1 family proteinO.I.H.G.S.X.
0.4053.10.93HF19N13r_s_atHF19N13r--3e+0At1g24147unknown proteinO.I.H.G.S.X.
0.4053.10.93HVSMEm0015O13r2_atHVSMEm0015O13r2--2e+0At3g49640FAD binding / catalytic/ tRNA dihydrouridine synthaseO.I.H.G.S.X.
0.4053.10.95Contig3903_x_atContig3903hypothetical protein LOC732694-3e+0At1g65150meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.4053.10.95HA22G05r_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3849.50.93Contig14065_atContig14065--6e-8At5g49770leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3849.50.93HA22G05r_x_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3849.50.91Contig3350_atContig3350--5e-2At5g10220ANN6 (ANNEXIN ARABIDOPSIS 6)O.I.H.G.S.X.
0.3849.50.92Contig3001_atContig3001--9e-12At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.3849.50.93Contig5662_atContig5662--3e-1At1g49975unknown proteinO.I.H.G.S.X.
0.3849.50.98Contig2160_atContig2160--2e-34At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.3747.90.90Contig9143_atContig9143--2e+0At2g26695binding / zinc ion bindingO.I.H.G.S.X.
0.3747.90.95Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.3647.10.93Contig1534_s_atContig1534--2e-5At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.3647.10.95Contig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.3647.10.92Contig15730_atContig15730--5e+0At1g11755LEW1 (LEAF WILTING 1)O.I.H.G.S.X.
0.3647.10.95Contig5241_atContig5241--8e-2At5g08790ATAF2O.I.H.G.S.X.
0.3443.60.89Contig349_s_atContig349--6e-52At1g09200histone H3O.I.H.G.S.X.
0.3443.60.91Contig5232_atContig5232--2e-30At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.3443.60.93HVSMEm0022B10r2_atHVSMEm0022B10r2--8e+0At3g05193unknown proteinO.I.H.G.S.X.
0.3342.60.97Contig21607_atContig21607--2e+1At5g50710unknown proteinO.I.H.G.S.X.
0.3240.30.92Contig6904_atContig6904--3e-41At3g11670DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)O.I.H.G.S.X.
0.3240.30.95Contig7933_atContig7933--5e-1At5g4854033 kDa secretory protein-relatedO.I.H.G.S.X.
0.3240.30.95Contig8993_atContig8993--1e-2At5g61430ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)O.I.H.G.S.X.
0.3138.60.84Contig6063_s_atContig6063--1e+0At3g10490anac052 (Arabidopsis NAC domain containing protein 52)O.I.H.G.S.X.
0.3138.60.95Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.3037.00.84Contig18066_atContig18066--7e+0At5g23920unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig3198_atContig3198--6e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.3037.00.94Contig21007_atContig21007--1e+0At2g27520F-box family proteinO.I.H.G.S.X.
0.2935.50.92Contig5196_atContig5196--2e-24At4g02120CTP synthase, putative / UTP--ammonia ligase, putativeO.I.H.G.S.X.
0.2935.50.94Contig10718_atContig10718--2e-7At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)O.I.H.G.S.X.
0.2935.50.94Contig26171_atContig26171--2e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)O.I.H.G.S.X.
0.2935.50.97Contig10910_atContig10910--3e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.2935.50.97Contig7078_s_atContig7078--2e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.798.3GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.298.0GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.197.3GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.696.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage