Co-expression analysis

Gene ID	Contig18164_at
Gene name
Homology with Arabidopsis	Similar to At1g20920: DEAD box RNA helicase, putative (HF=1e-11)
Module size	6 genes
NF	0.62
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig18164_at	Contig18164	-	-	1e-11	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig22208_at	Contig22208	-	-	2e+0	At1g02330	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.98	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.7	98.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1	97.3	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.205905.1.S1_at, orthologous to the query gene, Contig18164_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.205905.1.S1_at	At1g20920	hypothetical protein	-	6e-127	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.50711.1.A1_at	At1g20920	-	-	3e+0	At5g13070	MSF1-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.121399.2.A1_a_at	At1g20920	-	-	1e+0	At2g07772	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.214229.1.S1_at	At1g20920	type-b response regulator	-	7e-39	At2g25180	ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.101467.1.S1_at	At1g20920	hypothetical protein	-	1e-4	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.201220.1.S1_at	At1g20920	hypothetical protein	-	2e+0	At5g09630	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage