CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18164_at

Gene name
Homology with Arabidopsis Similar to At1g20920: DEAD box RNA helicase, putative (HF=1e-11)

Module size 6 genes

NF 0.62

%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.67 84.7 0.98 Contig22208_at Contig22208 - - 2e+0 At1g02330 - O.I. H.G. S.X.
0.67 84.7 0.98 Contig3992_at Contig3992 - - 1e-40 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.50 66.9 0.98 Contig25706_at Contig25706 - - 3e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.46 61.0 0.96 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.43 56.4 0.98 Contig7079_at Contig7079 - - 3e-3 At2g18980 peroxidase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.0 98.9 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
6.7 98.3 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
6.2 98.0 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.4 97.5 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.3 97.4 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1 97.3 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.6 96.8 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the rice gene, Os08g0154200, orthologous to the query gene, Contig18164_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 Os08g0154200 At1g20920 - Hypothetical protein 3e-9 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.19 15.1 Os05g0307200 At1g20920 - TPR-like domain containing protein 3e-1 At4g33170 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.17 12.6 Os12g0407200 At1g20920 - C2 calcium/lipid-binding region, CaLB domaincontaining protein 5e-21 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) O.I. H.G. S.X.
0.17 12.6 Os08g0153600 At1g20920 - Protein prenyltransferase domain containingprotein 2e-1 At5g40405 - O.I. H.G. S.X.
0.13 8.2 Os04g0247700 At1g20920 - Ribosomal protein L9 N-terminal-like domaincontaining protein 4e-1 At5g23300 PYRD (pyrimidine d) O.I. H.G. S.X.
0.10 5.7 Os07g0173300 At1g20920 - Hypothetical protein 7e-2 At1g26890 - O.I. H.G. S.X.
0.08 4.2 Os08g0340900 At1g20920 - PPR repeat containing protein 9e-2 At3g56550 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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