Co-expression analysis

Gene ID Contig18164_at
Gene name
Homology with ArabidopsisSimilar to At1g20920: DEAD box RNA helicase, putative (HF=1e-11)
Module size 6 genes
NF 0.62
%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.6784.70.98Contig22208_atContig22208--2e+0At1g02330-O.I.H.G.S.X.
0.6784.70.98Contig3992_atContig3992--1e-40At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.5066.90.98Contig25706_atContig25706--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.4661.00.96Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.4356.40.98Contig7079_atContig7079--3e-3At2g18980peroxidase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.798.3GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.298.0GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.197.3GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.696.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.33652.1.S1_at, orthologous to the query gene, Contig18164_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.9GmaAffx.33652.1.S1_atAt1g20920--5e-10At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2228.1Gma.16400.1.S1_a_atAt1g20920--1e-29At3g07160ATGSL10 (glucan synthase-like 10)O.I.H.G.S.X.
0.1923.7Gma.15268.1.S1_atAt1g20920--1e+0At4g24940SAE1A (SUMO-ACTIVATING ENZYME 1A)O.I.H.G.S.X.
0.1316.3Gma.6576.1.S1_atAt1g20920--2e+0At4g34720AVA-P1O.I.H.G.S.X.
0.1316.3Gma.3132.1.S1_atAt1g20920--1e-21At4g15180SDG2 (SET DOMAIN-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.0710.2Gma.8015.1.S1_atAt1g20920--1e-4At3g19840FF domain-containing protein / WW domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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