CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18164_at

Gene name
Homology with Arabidopsis Similar to At1g20920: DEAD box RNA helicase, putative (HF=1e-11)

Module size 6 genes

NF 0.62

%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.67 84.7 0.98 Contig22208_at Contig22208 - - 2e+0 At1g02330 - O.I. H.G. S.X.
0.67 84.7 0.98 Contig3992_at Contig3992 - - 1e-40 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.50 66.9 0.98 Contig25706_at Contig25706 - - 3e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.46 61.0 0.96 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.43 56.4 0.98 Contig7079_at Contig7079 - - 3e-3 At2g18980 peroxidase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.0 98.9 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
6.7 98.3 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
6.2 98.0 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.4 97.5 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.3 97.4 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1 97.3 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.6 96.8 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g20920, orthologous to the query gene, Contig18164_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g20920 838685 DEAD box RNA helicase, putative F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.06 1.4 At2g47410 819354 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.06 1.4 At2g44950 819104 HUB1 (HISTONE MONO-UBIQUITINATION 1) The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. O.I. H.G. S.X.
0.04 0.9 At3g25840 822178 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus;MOFPBVA O.I. H.G. S.X.
0.01 0.2 At3g26560 822264 ATP-dependent RNA helicase, putative F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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